Protocol for Scipion


-You can access a html summarizing data collection on the fly. These results will be found in your scratch folder as a fourth job 'monitor summary' alongside your import, motioncor2 and ctf correction jobs. in your results folder you should find (if it's the first time importing the workflow in this project):





Use X2Go or SSH to login to a wynton node ( to access your scratch folder and open this html via firefox to view thumbnails of your data as it's pre-processed, with updates on defocus and collection uptime. Contact [email protected] or [email protected] if any issues arise.